MRIQC: individual T1w report

Summary

Subject ID: 037_ExercisePre.
Date and time: 2018-05-06, 22:21.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.2593145084465896
cnr			4.840410820935071
efc			0.606056094222638
fber			81.09690856933594
fwhm	avg		3.673716666666667
fwhm	x		3.61094
fwhm	y		3.79121
fwhm	z		3.619
icvs	csf		0.20075625435713296
icvs	gm		0.4707623271330047
icvs	wm		0.32848141850986234
inu	med		1.0039782524108887
inu	range		0.27594998478889454
qi	1		0.0
qi	2		0.0007247759290014842
rpve	csf		22.830176324682913
rpve	gm		11.104497132861173
rpve	wm		18.556670262666394
size	x		180
size	y		256
size	z		256
snr	csf		2.5022101278320528
snr	gm		10.357998575458552
snr	total		10.862858368505693
snr	wm		19.728366402226477
snrd	csf		13.950482296546857
snrd	gm		28.319053100331097
snrd	total		29.424472344727587
snrd	wm		46.003881637304794
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	0.4181725058266341
summary	bg	mad	14.241022109985352
summary	bg	mean	53.11139678955078
summary	bg	median	52.13323211669922
summary	bg	n	2895535.0
summary	bg	p05	31.75866413116455
summary	bg	p95	78.06133651733396
summary	bg	stdv	14.359395980834961
summary	csf	k	9.162059210248698
summary	csf	mad	135.8461456298828
summary	csf	mean	302.8103942871094
summary	csf	median	303.2485046386719
summary	csf	n	10717.0
summary	csf	p05	120.32892913818361
summary	csf	p95	484.201513671875
summary	csf	stdv	121.18660736083984
summary	gm	k	0.4412554722490265
summary	gm	mad	55.86774444580078
summary	gm	mean	615.2129516601562
summary	gm	median	615.585205078125
summary	gm	n	39234.0
summary	gm	p05	516.5509429931641
summary	gm	p95	712.8464294433594
summary	gm	stdv	59.430145263671875
summary	wm	k	0.9393589064513184
summary	wm	mad	43.818931579589844
summary	wm	mean	994.53173828125
summary	wm	median	1000.009033203125
summary	wm	n	180075.0
summary	wm	p05	899.0630676269532
summary	wm	p95	1067.5867919921875
summary	wm	stdv	50.688751220703125
tpm	overlap	csf	0.2043996900320053
tpm	overlap	gm	0.5309135913848877
tpm	overlap	wm	0.5296463370323181
wm2max			0.5898407932050055

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	fa04ba0c0ad226fb5567531436539a6e
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.