MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.2593145084465896
cnr4.840410820935071
efc0.606056094222638
fber81.09690856933594
fwhmavg3.673716666666667
fwhmx3.61094
fwhmy3.79121
fwhmz3.619
icvscsf0.20075625435713296
icvsgm0.4707623271330047
icvswm0.32848141850986234
inumed1.0039782524108887
inurange0.27594998478889454
qi10.0
qi20.0007247759290014842
rpvecsf22.830176324682913
rpvegm11.104497132861173
rpvewm18.556670262666394
sizex180
sizey256
sizez256
snrcsf2.5022101278320528
snrgm10.357998575458552
snrtotal10.862858368505693
snrwm19.728366402226477
snrdcsf13.950482296546857
snrdgm28.319053100331097
snrdtotal29.424472344727587
snrdwm46.003881637304794
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk0.4181725058266341
summarybgmad14.241022109985352
summarybgmean53.11139678955078
summarybgmedian52.13323211669922
summarybgn2895535.0
summarybgp0531.75866413116455
summarybgp9578.06133651733396
summarybgstdv14.359395980834961
summarycsfk9.162059210248698
summarycsfmad135.8461456298828
summarycsfmean302.8103942871094
summarycsfmedian303.2485046386719
summarycsfn10717.0
summarycsfp05120.32892913818361
summarycsfp95484.201513671875
summarycsfstdv121.18660736083984
summarygmk0.4412554722490265
summarygmmad55.86774444580078
summarygmmean615.2129516601562
summarygmmedian615.585205078125
summarygmn39234.0
summarygmp05516.5509429931641
summarygmp95712.8464294433594
summarygmstdv59.430145263671875
summarywmk0.9393589064513184
summarywmmad43.818931579589844
summarywmmean994.53173828125
summarywmmedian1000.009033203125
summarywmn180075.0
summarywmp05899.0630676269532
summarywmp951067.5867919921875
summarywmstdv50.688751220703125
tpmoverlapcsf0.2043996900320053
tpmoverlapgm0.5309135913848877
tpmoverlapwm0.5296463370323181
wm2max0.5898407932050055

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sumfa04ba0c0ad226fb5567531436539a6e
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.